Publications

Two special issues in Journal of Sea Research (vol. 62, issues 2-3) were published in October 2009. Most of papers have been  presented at the DEB2009 symposium (see the book of abstracts). These special issues include 14 papers and a general introduction (see below for the list of the different contributions).

Alunno-Bruscia, M., H.W. van der Veer, S.A.L.M. Kooijman. 2009. The AquaDEB project (phase I): Analysing the physiological flexibility of aquatic species and connecting physiological diversity to ecological and evolutionary processes by using Dynamic Energy Budgets. J. Sea Res. 62: 43-48, doi: 10.1016/j.seares.2009.07.005

Rosland, R., Strand, Ø., Alunno-Bruscia, M., Bacher, C., Strohmeier, T. 2009. Applying Dynamic Energy Budget (DEB) theory to simulate growth and bio-energetics of blue mussels under low seston conditions, J. Sea Res. 62: 49-61, doi: 10.1016/j.seares.2009.02.007.

Bourlès, Y., Alunno-Bruscia, M., Pouvreau, S., Tollu, G., Leguay, L., Arnaud, C., Kooijman, S.A.L.M., Goulletquer, P. 2009. Modelling growth and reproduction of the Pacific oyster Crassostrea gigas: Advances in the oyster-DEB model through application to a coastal pond. J. Sea Res. 62: 62-71, doi:10.1016/j.seares.2009.03.002.

Ren, J.S. 2009. Effect of food quality on energy uptake. J. Sea Res. 62: 72-74, doi:10.1016/j.seares.2008.11.002.

Freitas, V., Cardoso, J.F.M.F. , Santos, S. , Campos, J., Drent,  J., Saraiva, S., Witte, J.I.J., Kooijman, S.A.L.M., van der Veer, H. W. 2009. Reconstruction of food conditions for Northeast Atlantic bivalve species based on Dynamic Energy Budgets. J. Sea Res. 62: 75-82, doi:10.1016/j.seares.2009.07.004.

van der Veer, H. W., Cardoso, J.F.M.F., Peck, M.A., Kooijman, S.A.L.M. 2009. Physiological performance of plaice Pleuronectes platessa (L.): a comparison of Static and Dynamic Energy Budgets, J. Sea Res. 62: 83-92, doi: 10.1016/j.seares.2009.02.001.

Pecquerie, L., Petitgas, P., Kooijman, S.A.L.M. 2009. Modeling fish growth and reproduction in the context of the Dynamic Energy Budget theory to predict environmental impact on anchovy spawning duration, J. Sea Res. 62: 93-105, doi: 10.1016/j.seares.2009.06.002.

Campos, J. H. van der Veer, S.A.L.M. Kooijman. 2009. Growth of the brown shrimp Crangon crangon (L.) in the Dutch Wadden Sea by means of Dynamic Energy Budgets: Contribution of summer and winter generations to commercial fisheries. J. Sea Res. 62: 106-113, doi: 10.1016/j.seares.2009.07.007.

Flye-Sainte-Marie, J., F. Jean, C. Paillard, S.A.L.M. Kooijman, 2009. A quantitative estimation of the energetic cost of brown ring disease in the Manila clam using Dynamic Energy Budget theory. J. Sea Res. 62: 114-123, doi:10.1016/j.seares.2009.01.007

Bodiguel, X., O. Maury, C. Mellon-Duval, F. Roupsard, A.-M. Le Guellec, V. Loizeau. 2009. A dynamic and mechanistic model of PCB bioaccumulation in the European hake (Merluccius merluccius). J. Sea Res. 62: 124-134, doi: 10.1016/j.seares.2009.02.006

Lika, K. & Papadakis I.A. 2009. Modelling the biodegradation of phenolic compounds by microalgae. J. Sea Res. 62: 135-146, doi:10.1016/j.seares.2009.02.005.

Grangeré, K., A. Ménesguen, S. Lefebvre, C. Bacher, S. Pouvreau. 2009. Modelling the influence of environmental factors on the physiological status of the Pacific oyster Crassostrea gigas in an estuarine embayment; The Baie des Veys (France), J. Sea Res. 62: 147-158, doi:10.1016/j.seares.2009.02.002

Maar, M., Karsten Bolding, K. Petersen, J.K. Hansen, J.S.L. & K. Timmermann. 2009. Local effects of blue mussels around turbine foundations in an ecosystem model of Nysted off-shore wind farm, Denmark, J. Sea Res. 62: 159-174, doi:10.1016/j.seares.2009.01.008.

Kooijman, S.A.L.M. 2009. Social interactions can affect feeding behaviour of fish in tanks. J. Sea Res. 62: 175-178, doi: 10.1016/j.seares.2009.06.003.

Omta, A.W., Bruggeman, J., Kooijman, S.A. L.M. Dijkstra, H. 2009. The biological carbon pump in the Atlantic.J. Sea Res. 62: 179-187, doi: 10.1016/j.seares.2009.06.005.

Eichinger, M., Kooijman, S.A.L.M., Sempéré, R., Poggiale, J.-C., 2009. Consumption and release of dissolved organic carbon by marine bacteria in a pulsed-substrate environment: from experiments to modelling. Aqua. Microb. Ecol., 56, 41–54.
Oral communications
 Alunno-Bruscia M., Bacher, C., Strand Ø., Rosland R., Smaal, A.C., Cranford, P., Grant, J. Oral communication. Multi-site comparison of the growth of cultured blue mussels (Mytilus edulis) using the Dynamic Energy Budget theory). Oral communication, Aquaculture Europe AE2009, Trondheim (Norway), 14-17 August 2009.

Bodiguel, X., Maury, O., Mellon-Duval, C., Rouspard, F., Le Guellec, A.-M., Loizeau, V. A dynamic and mechanistic model of PCB bio-accumulation in the European hake (Merluccius merluccius). 1st DEB Symposium, DEB Theory: 30 years of research for metabolic organization, Brest, 19-22 April 2009.

Boukal, D., Laugen, A., Dieckman, U., Ernande, B. DEB model of the growth of Pacific oysters in the Marennes-Oléron Bay: implications of life cycle closure and density-dependent feedback. 1st DEB Symposium, DEB Theory: 30 years of research for metabolic organization, Brest, 19-22 April 2009.

Bourlès, Y., Maurer, D., Le Moine, O., Geairon, P., Mazurié, J., Gangnery, A., Alunno-Bruscia, M., Pouvreau, S. Oral communication. Modelling growth and reproduction of the Pacific osyter Crassostrea gigas: application of the oyster-DEB model to various shellfish areas in France. 1st DEB Symposium, DEB Theory: 30 years of research for metabolic organization, Brest, 19-22 April 2009.

Campeas, A., Chatain, B., Millot, S., Di-Poi, C., Lemarié, G., Person, J., Bégout, M.-L., Alunno-Bruscia, M. Bio-energetic modelling of growth of the European sea bass in aquaculture, based on Dynamic Energy Budget theory.1st DEB Symposium, DEB Theory: 30 years of research for metabolic organization, 19-22 April 2009, Brest, France.

Casas, S., Bacher, C., J.L. Gonzalez, B. Andral, D. Cossa. Assessment of water contamination for coastal monitoring: use of Dynamic Energy Budget models. ICMSS, 14-19 June 2009, Nantes, France.

Ducrot, V., Péry, A. Extrapolation of chronic effects of toxicants based on short-term test data using DEBtox models. 1st DEB Symposium, DEB Theory: 30 years of research for metabolic organization, Brest, 19-22 April 2009.

Eichinger, M., Bacher, C., Bégout, M.-L., Loizeau, V. Bioaccumulation of organic contaminant in the common sole (Solea solea): an investigation coupling experimentation, in situ sampling and modelling. 1st DEB Symposium, DEB Theory: 30 years of research for metabolic organization, Brest, 19-22 April 2009.

Eichinger, M., Kooijman, S.A.L.M., Sempéré, R., Lefèvre, D., Grégori, G., Charrière, B., Poggiale, J.-C. DOC consumption and release by marine bacteria in transient environment: from experiments to modeling. 1st DEB Symposium, DEB Theory: 30 years of research for metabolic organization, Brest, 19-22 April 2009.

Emmery, A., Jean, F., Flye Sainte-Marie, J., Chauvaud, L., Paulet, Y.-M., Pouvreau, S. Interannual variability of individual growth of the great scallop Pecten maximus. 1st DEB Symposium, DEB Theory: 30 years of research for metabolic organization, Brest, 19-22 April 2009.

Fablet R., Pecquerie L., Hoie, H., Jolivet, A., Millner, R., Mosegaard, H., Kooijman, S.A.L.M., De Pontual, H. A DEB-based framework for analyzing individual life traits recorded by fish otoliths. 1st DEB Symposium, DEB Theory: 30 years of research for metabolic organization, Brest, 19-22 April 2009.

Fablet R., Pecquerie L., Hoie, H., Jolivet, A., Millner, R., Mosegaard, H., Kooijman, S.A.L.M., De Pontual, H. Can we model otolith growth and opacity patterns as a response to environmental factors and fish metabolism? A DEB-based framework. 4th International Otolith Symposium, Monterey, 24-28 August 2009.

Grangeré K., Lefebvre S., Bacher C., Cugier P., Ménesguen, A. Modelling the ecophysiological response of the Pacific oyster Crassostrea gigas to the spatial variability of environmental factors. Aquaculture Europe AE2009, Trondheim (Norway), 14-17 August 2009.

Maury, O., Poggiale, J.-C. A DEB-based model of marine ecosystem size-spectrum with life history diversity. 1st DEB Symposium, DEB Theory: 30 years of research for metabolic organization, 19-22 April 2009, Brest, France.

Pecquerie L., Nisbet, R.M., Fablet R., Kooijman, S.A.L.M. Dynamics of stable isotopes in fluctuating environments. 1st DEB Symposium, DEB Theory: 30 years of research for metabolic organization, Brest, 19-22 April 2009.

Pecquerie L., Fablet R., Lorrain A., Dufour E., Gerdeaux D., Nisbet R.M. Kooijman S.A.L.M. Dynamics of d13C isotope ratio in fish otoliths and bivalve shells in the context of the Dynamic Energy Budget (DEB) theory. 4th International Otolith Symposium, Monterey, 24-28 August 2009.

Pecquerie L., Nisbet, R.M., Fablet R., Kooijman, S.A.L.M. Resolving environmental effect on stage transitions
in anchovy early life history using Dynamic Energy Budget (DEB) theory. 4th International Otolith Symposium, Monterey, 24-28 August 2009.

Péry, A., Ducrot, V. DEBtox models as a basis for population toxicological risk assessment. 1st DEB Symposium, DEB Theory: 30 years of research for metabolic organization, 19-22 April 2009, Brest, France.

Pouvreau, S., Y. Bourlès, I. Bernard, K. Grangeré, B. Rico-Villa, A. Emmery, Y. Thomas, M. Alunno-Bruscia. What can the Dynamic Energy Budget theory tell us about the filter feeders eco-physiology? 1st DEB Symposium, DEB Theory: 30 years of research for metabolic organization, 19-22 April 2009, Brest, France.

Rannou, E. Discovering and learning the DEB through the Growth DEB equation.1st DEB Symposium, DEB Theory: 30 years of research for metabolic organization, 19-22 April 2009, Brest, France.

Struski C., L. Pecquerie, P. Petitgas, M. Huret. Potential spawning of anchovy in the Bay of Biscay: use of a bioenergetic model with an environmental long time-series. 1st DEB Symposium, DEB Theory: 30 years of research for metabolic organization, Brest, 19-22 April 2009.

Wijsman, J.W.M., Troost, T.A., Brummelhuis, E., Smaal, A.C. A Dynamic Energy Budget model for cockles in the Oosterschelde. 1st DEB Symposium, DEB Theory: 30 years of research for metabolic organization, Brest, 19-22 April 2009.


Posters
Bourlès, Y., D. Maurer, O. Le Moine, P. Geairon, J. Mazurié, A. Gangnery, M. Alunno-Bruscia, S. Pouvreau, P. Goulletquer. Modelling Crassostrea gigas growth and reproduction in different contrasted ecosystems by using dynamic energy budget theory. Poster AE2009, Trondheim (Norway), 14-17 August 2009. Best poster Award.

Campeas, A., S. Millot, B. Chatain, M.-L. Bégout, M. Alunno-Bruscia. Poster. Effects of domestication, selection and stress on the energy balance in Sea bass (Dicentrarchus labrax), Poster AE2009, Trondheim (Norway), 14-17 August 2009.

Emmery, A., Lefebvre, S., Alunno-Bruscia, M., Kooijman, S.A.L.M. Modeling isotopes dynamics in soft tissues of Crassostrea gigas in the context of DEB theory to study the trophic ecology of oysters at large spatial scale. 1st DEB Symposium, DEB Theory: 30 years of research for metabolic organization, 19-22 April 2009, Brest, France.

Flye-Sainte-Marie, J., Alunno-Bruscia, M., Gangnery, A., Rannou, E., Rosland, R., Strand, Ø. Individual mussel growth model using DEB (Dynamic Energy Budget) theory: revisiting the DEB parameter values for Mytilus edulis. Poster, AE2009, Trondheim (Norway), 14-17 August 2009.

Rannou, E., Eichinger, M. A new approach for estimation of DEB parameter values estimation, the Growth DEB equation, illustrated by the common Sole (Solea solea) case. 1st DEB Symposium, DEB Theory: 30 years of research for metabolic organization, 19-22 April 2009, Brest, France.


Reports (masters, Ph.D, scientific reports)

 Grangeré, K. 2009. Réponse écophysiologique de l'huître creuse Crassostrea gigas à la variabilité spatio-temporelle des facteurs environnementaux - Etude par modélisation écologique. PhD thesis, Université de Caen/Basse-Normandie, Ecole Docorale Normaznde Biologie Intégrative, Santé, Environnement, 294 p.

 Rico-Villa, B. 2009. Les besoins écophysiologiques des larves d'huître creuse Crassostrea gigas en conditions contrôlées : effet de la température, de la nourriture et modélisation de la croissance. PhD thesis, Université de Brest, IUEM, Ecole doctorale des Sciences de la Mer, 179 p.

Thomas, Y. 2009. Ecologie larvaire de l'huître perlière (Pinctada margaritifera, L.), croissance et dispersion dans un lagon d'atoll polynésien/Larval ecology of the pearl oyster (Pinctada margaritifera, L.) growth and dispersion in a Polynesian atoll lagoon. PhD thesis, Université de Bretagne Occidentale, 188 p.